DeCypher Interface

Web Interface

DeCypher includes a web interface based on the industry standard Apache web server. Accessible by Mac, PC and Unix, users will have direct interactive access to DeCypher for all their similarity search needs, with results returned by email or directly back to your favorite web browser. 

DeCypher’s intuitive web interface enables you to compare thousands of sequences per search against databases you define from public or internal data. Color-coded search results, returned as HTML or text, reflect biologically relevant alignment details, including % identity, gapping & frameshifts (on each strand), mismatches and multiple domains.

Search results can be delivered via email notification or graphically via the browser. NCBI html and text results formats are available to simplify integration with your existing pipelines. The web interface utilizes the Apache web server and convenient cascading stylesheets (CSS) for easy integration with your institution’s look and feel.

Job results can be sent to your browser, your email, or by file I/O as:

• Graphical Alignments
  Display biologically relevant alignment details, including % identity, gapping, frame shifts, mismatches, and multiple domains.
• HTML Hypertext
  Links to annotation servers
• Tab- and Comma- Record Sets
  Ideal for further manipulation by Perl and MS-Excel, as it outputs only the fields you select.
• ASCII plain text output is also available.

Efficient UNIX Command-line Interface

Advanced bioinformatics pipeline programmers will appreciate the complete sockets-driven UNIX command-line package included at no extra charge with DeCypher. If you prefer to develop applications solely on client-side UNIX, this package makes the underlying network connection to DeCypher completely transparent. Perl, shell and C applications programming under UNIX are a breeze. Full ANSI C source codes provided for UNIX client-side. Current users who would like this package absolutely free need only contact our Support Team.

Learn more about DeCypher today by calling 760-431-1263 ext. 4 or contact us through the web to learn more about the only accelerated BLAST solution!