Published Articles

Please contact us if you are planning an upcoming article on life science computing or High Performance Computing for bioinformatics.

• BioSilico, Volume 2, Number 1
  Hardware and software systems for accelerating common bioinformatics sequence analysis algorithms
  Roland Luethy, Ph.D. & Christopher Hoover
  
  
• Global Discovery & Development
  Bioinformatics analysis for a wider audience
  
  
• Science
  Laboratory Technology Trends:
  Information Technology in the Life Sciences:
  IT's Intensifying Influence
  
  
• BioITWorld Bio-IT Champions
  Interview with Jim Lindelien, TimeLogic Founder
  
  
• Gene-BLAST- an improvement to the BLAST algorithm
  
  
• TimeLogic Whitepaper, August 2001
  TL-FAMs: a set of new protein databases
  OMICS, January 2002
  
  
• Stuck in a BLAST rut?
  Genome Technology, July 2001
  
  
• Tera-BLAST- a Hardware Accelerated
  Implementation of the BLAST Algorithm
  TimeLogic Whitepaper, August 2000.
  
  
• Proteomics vs. Genomics
  The Biotech Journal, October 1998
  
  
• Genomics
  The Biotech Journal, Sept. 1998
  

Speaking Engagements

• An introduction to TimeLogic DeCypher
  Sun Comp-Bio Sig, Santa Clara, October 2002
  
  
• The Benefits of Accelerated Server Farms
  High Performance Computing Conference
  Denver, November 2001
  
  
• TL-FAMs- a New Set of Specific Protein Family Databases
  Protein Informatics Conference
  San Diego, November 2001
  
  
• Optimal Algorithm Selection for Bioinformatics
  Plant and Animal Genomics Conference
  San Diego, 2001
  
  
• Genome to Genome Comparisons Using TeraBLAST
  Bioinformatics Conference, San Francisco
  
  

Poster Presentations

• Building a better BLAST: A systematic comparison
  of BLAST implementations
  GIW, Japan, December 2002
  
  
• Unlimited Power- The Benefits of Accelerated Computer Farms
  GSAC 2001, San Diego
  
  
• TL-FAM’s- a set of protein family databases
  ISMB 2001, Copenhagen
  
  
• Analytical Methods for Genomic Comparisons
  ISMB 2000
  
  
• Comparative Genomics using Tera-BLAST
  Computational Genomics, November 2000
  
  
• Analytical Methods for Genomic Analysis
  GSAC, September 2000
  
  
• Tera-BLAST- a new accelerated algorithm for Genome/Genome comparisons
  Advances in Genome Biology & Technology, February 2000
  
  
• PFAM-Pro: a new Procaryotic Protein family database
  ASM Microbial Genomics Conference, February 2000

See also our list of published citations.

Referencing TimeLogic Products

Please note the following examples for referencing purposes.

• DeCypher® Bioinformatics Accelerator (TimeLogic, Carlsbad, CA)
• My DeCypher™ Personal Bioinformatics Supercomputer (TimeLogic, Carlsbad, CA)
• Tera-BLAST™ Hardware Accelerated BLAST Algorithm (TimeLogic, Carlsbad, CA)
• Symmetric Frame Independent™ Algorithm (TimeLogic, Carlsbad, CA)

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