For homology modeling, TimeLogic's Tera-BLAST and DeCypherSW algorithms are perfect for comparing new sequences to the Protein Data Bank (PDB). For sequences that do not have significant homology with existing PDB structures, DeCypherHMM can be used to compare these unknown sequences against the Superfamily database with the goal of identifying SCOP protein families.
Related Scientific Citations
Below is a short list of some recent DeCypher citations for Structural Biology. For the complete list, please visit our citations page here.
Selecting Folded Proteins from a Library of Secondary Structural Elements
Structural and Functional Diversity of the Microbial Kinome
A model of the acid sphingomyelinase phosphoesterase domain based on its remote structural homolog purple acid phosphatase
The SUPERFAMILY database in 2004: additions and improvements