Agricultural Genomics

Genome sequencing consortia and annotation projects continue to add to the list of completed plant genomes. The considerable size and complexity of these genomes requires the latest technology for data analysis. TimeLogic's sequence comparison tools provide the capability to accelerate annotation of plant genomes and comparative agricultural genomics.

Related Scientific Citations

Below is a short list of some recent DeCypher citations for Agricultural Genomics. For the complete list, please vist our citations page here.

1. Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets
   Richard L Tillett, Ali Ergül, Rebecca L Albion, Karen A Schlauch, Grant R Cramer and John C Cushman.
   BMC Plant Biology 2011, 11:86.
2. Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.
   Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J Rawlings and Mansoor Saqi
   BMC Bioinformatics 2011, 12:203.
3. Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa
   Jun Wang, Derek J Lydiate, Isobel AP Parkin, Cyril Falentin, Régine Delourme, Pierre WC Carion and Graham J King
   BMC Genomics 2011, 12:101.
4. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics
   Christopher Gobler, Dianna Berry, Sonya Dyhrman, and Steven Wilhelm.
   Proceedings of the National Academy of Sciences of the USA 108.11 (2011): 4352-4357.
5. An in silico study of the genes for the isoflavonoid pathway enzymes in soybean reveals novel expressed homologues.
   J M Livingstone, P. Seguin, M V Strömvik
   Canadian Journal of Plant Science, 2010, 90:453-469.
6. A Brassica Exon Array for Whole-Transcript Gene Expression Profiling
   Christopher G. Love, Neil S. Graham, Seosamh Ó Lochlainn, Helen C. Bowen4, Sean T. May, Philip J. White, Martin R. Broadley, John P. Hammond, Graham J. King
   PLoS ONE (2010), 5(9): e12812.
7. Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae.
   François Fauteux and Martina V Strömvik
   BMC Plant Biology 2009, 9:126.
8. MATE Transporters Facilitate Vacuolar Uptake of Epicatechin 3'-O-Glucoside for Proanthocyanidin Biosynthesis in Medicago truncatula and Arabidopsis.
   Jian Zhao and Richard A. Dixon
   The Plant Cell 21:2323-2340 (2009).
9. GarlicESTdb: an online database and mining tool for garlic EST sequences.
   Dae-Won Kim, Tae-Sung Jung, Seong-Hyeuk Nam, Hyuk-Ryul Kwon, Aeri Kim, Sung-Hwa Chae, Sang-Haeng Choi, Dong-Wook Kim, Ryong Nam Kim and Hong-Seog Park
   BMC Plant Biology 2009, 9:61.
10. BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.).
    Yihua Zhou, Shengben Li, Qian Qian, Dali Zeng, Mu Zhang, Longbiao Guo, Xiangling Liu, Baocai Zhang, Lingwei Deng, Xinfang Liu, Guanzheng Luo, Xiujie Wang, Jiayang Li1
    The Plant Journal, Volume 57, Issue 3, pages 446–462, February 2009.