TimeLogic's DeCypher® systems are ideal for genomics specialists that create tools for data exploration and discovery and maintain genome-specific data portals. Our low form-factor FPGA-accelerated solutions free bioinformaticians from having to rely heavily on IT support. In a single cluster node or desktop workstation, comprehensive BLAST, Smith-Waterman, and gene modeling analyses can be run against well-curated databases of known nucleic or protein sequences. Protein sequences can also be compared to to annotated Hidden Markov Model databases such as PFAM. Additionally, the HMM-Framesearch method is available for automatic translation of your nucleic sequences and frameshift tolerant alignments while assigning protein families.
Related Scientific Citations
Below is a short list of some recent DeCypher citations for Genome Annotation. For the complete list, please vist our citations page here.
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics
Development and Application of Bovine and Porcine Oligonucleotide Arrays with Protein-Based Annotation.
A Brassica Exon Array for Whole-Transcript Gene Expression Profiling