AKS: Comprehensive Project Management

AKS stores your past searches and allows you to give access to the analyses to others, in the aim of sharing and discussing them with colleagues.

Example
This example guides you through the AKS management system showing how easy it is to store and share knowledge among users.

AKS allows the saving of document's analyses and the visual representations produced as projects (for more information on document analysis see Large document set analysis). Analyses are stored in a practical folder system, in order to keep them organized. In Fig. 1 we have retrieved a search for the combination of a drug and a disease. We want to perform an in-depth analysis of the bioentities featured in the retrieved documents and the relationships among them. If aiming to achive this goal, we have to create an analysis. This analysis will be stored as a project. In Fig. 2 we can see how the analysis is created by simply assigning a name, the project and the location in the system of folders of the project. In Fig. 3, the new analysis is created. We can see in the list that the projects contain one of two types of analysis: textual analysis (like the case above) or graphical representation of bioentities and their relationships as graphs.

We can retrieve the folder lists where the previous analysis to which we have access are stored by clicking on "Project list" on the upper right side of the AKS window. (Fig. 4)

Fig 1. Documents retrieved by a query. The documents contain both "migraine" and "sumatriptan" at the same time. By clicking "Create analyses" the creation of the analysis with this document set begins.	Fig 2. Creation of an analysis.
	Fig 3. The analysis is created and stored to the project we have indicated. Note that the analyses of the project are listed and comprised by types (distinguishable by the icon on the left side): analyses such as "Migraine and Sumatriptan" (the one newly created) comes from the documents retrieved by a query. Analyses like "Biosynthesis_dopamine_intermediate" are graphical representations (graphs) of the cooccurrences in the literature among genes we have selected.
	Fig 4. See how Sam Smith has access to three different project folders. One is its own project folder, the other is the "Default project" folder shared by every user of the system, an the third one is Ramon's project folder, with whom he has a close collaboration.

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